Genetics of Hereditary Spastic Paraplegias (HSP)


Diagnostic test

Differential diagnosis

Cranial MRI

Bilateral structural lesions

Leukodystrophies

Arnold-Chiari malformation

MRI of the spinal cord

Myelon compression due to cervical myelopathy and tumor

Hemorrhage and abscess

Arteriovenous malformation

Myelomeningocele

Tethered cord

Syringomyelia

Blood tests

Vitamin B12 deficiency

Very long-chain fatty acids (adrenomyeloneuropathy)

Lysosomal enzymes incl. galactosylceramidase (Krabbe disease)

TPHA (neurosyphilis)

HTLV1 (tropical spastic paraparesis)

HIV (AIDS)

Cerebrospinal fluid

Myelitis (cell count, oligoclonal bands)

Neurophysiology

 Motor evoked potentials

Amyotrophic lateral sclerosis

 Nerve conduction studies

Primary lateral sclerosis

 Electromyography

Spastic variants of Charcot-Marie-Tooth disease (HMSN type V)

Levodopa test

Dopamine-responsive dystonia (DRD)





Genetic Subtypes of HSP



Hereditary Spastic Paraplegia Genes (SPG 1–72)


HSPs are among the most heterogeneous Mendelian diseases and can be inherited following autosomal-dominant, autosomal-recessive, and X-chromosomal modes of inheritance. Additionally almost half of all cases are apparently sporadic, and it is currently unknown whether these forms are also monogenetic in origin or whether they have more complex disease etiologies.

Currently there are at least 83 HSP loci and 68 HSP genes known, about three quarters of which have been identified within the past 5 years (Fig. 16.1) [6]. HSP loci are termed SPG 1–72 (SPG = spastic paraplegia gene) according to the HUGO gene nomenclature committee; however, not all HSP genes have received an SPG number.

A323607_1_En_16_Fig1_HTML.gif


Fig. 16.1
HSP genes


Autosomal-Dominant HSP


About 40 % of HSP cases report an autosomal-dominant family history with affected family members in at least two generations. Mutations in any of the known 13 autosomal-dominant HSP genes explain about 70 % of dominant cases (Table 16.2).


Table 16.2
Autosomal-dominant HSP genes and phenotypes


















































































































































Locus

Gene

Frequency

Mutation types

Phenotype

Reference

Age of onset

Typical presentation

Rare manifestations

MRI

SPG3

ATL1

6 % AD HSP

Up to 39 % with onset in childhood

Missense, truncating

Some cases with incomplete penetrance. Some de novo mutations

Childhood (rare: up to 5th decade)

Pure, slow progression

Distal amyotrophy (Silver syndrome), optic atrophy

Normal

[7, 8]

SPG4

SPAST

40–50 % AD HSP

Missense, truncating, splice site, indels, (multi)-exonic deletion or duplication

Disease modifiers: c.334G > A and c.1157A > G.

Some cases with incomplete penetrance

1st–8th decade. Intrafamilial variability can be considerable

Pure

Dementia, cerebellar ataxia, hand tremor, neuropathy, seizures

Most cases: normal cranial MRI

Mild cerebellar and spinal cord atrophy, white matter lesions or thinning of corpus callosum may occur

[9, 10]

SPG6

NIPA1

< 1 % HSP

Missense

1st–4th decade

Pure

Epilepsy, neuropathy

Normal

[11]

SPG8

KIAA0196

Up to 4 % AD HSP

Missense

2nd–6th decade

Pure, frequent progression to wheelchair dependence

Distal amyotrophy

Brain normal, atrophy of the thoracic spinal cord

[12]

SPG10

KIF5A

3 % of AD HSP

Missense in kinesin motor domain

1st–6th decade

HSP with (subclinical) neuropathy

Cognitive impairment, parkinsonism, Silver syndrome, deafness, retinitis pigmentosa

Normal

[13, 14]

SPG12

RTN2

Rare

Missense, truncating, gene deletion

1st–4th decade

Pure
 
Brain normal, atrophy of the spinal cord

[15]

SPG13

HSPD1

Rare

Missense

2nd–7th decade

Pure

Allelic disease: AR: hypomyelinating leukodystrophy
 
[16]

SPG17

BSCL2

Rare, about 30 families published

2 missense mutations in exon 3

2nd decade (range: 1st–7th decade), incomplete penetrance

Pure HSP or Silver syndrome (HSP with amyotrophy of intrinsic hand muscles)

Allelic diseases

AD: Charcot-Marie-Tooth disease type 2, distal hereditary motor neuropathy (dHMN) type V

AR: Berardinelli-Seip congenital lipodystrophy type 2

Brain normal, atrophy of the spinal cord

[17]

SPG31

REEP1

3 % HSP

8 % pure HSP

7 % AD HSP negative for SPG4

Missense, truncating, splice site, indels, 3’-UTR, (multi)-exonic duplication

1st–8th decade

Pure

Neuropathy, Silver syndrome, cerebellar ataxia, tremor, dementia

Normal
 

(SPG33)

ZFYVE27

1 family

Missense, but allele frequency of G191V > 1‰ in controls

50

Pure
   
[18]

SPG42

SLC33A1

1 family

Missense. Incomplete penetrance

1st–5th decade

Pure

Muscle wasting in lower limbs

Normal

[19]

SPG72

REEP2

2 families

AD + AR inheritance!

Missense, splice site

Childhood

Pure
   
[20]

SPG4, caused by mutations in the SPAST gene, accounts for roughly 50 % of autosomal-dominant HSP families and is by far the most common subtype of HSP. SPG4 is characterized by a variable age at onset ranging from early childhood to the 8th decade even within families sharing the same mutation, with a mean age at onset of just over 30 years of age. The majority of SPG4 cases have pure HSP with rather frequent neurogenic bladder disturbance (~70 %) and affection of the dorsal columns (~50 %). Motor evoked potentials are often normal even when there is clinically definite involvement of the corticospinal tracts [1]. Some cases with complicated SPG4 have been reported that feature cognitive deficits, upper limb involvement, thin corpus callosum, or other complicating signs and symptoms. Mutation types in SPG4 included missense, nonsense and splice site mutations, small insertions and deletions, and large genomic deletions. It is important to note that the latter mutations, which account for about one fifth of SPG4 cases, cannot usually be detected by Sanger sequencing. State-of-the-art diagnostic testing in SPG4 therefore needs to include a method to screen for macro-deletions like multiplex ligation-dependent probe amplification (MLPA) [9].

SPG3 typically presents as childhood-onset (<10 years) pure HSP with very slow progression and may be equally common as SPG4 in this age group. However cases with an onset as late as the 5th decade have been reported [21]. In adult-onset cases, SPG3 contributes less than 10 %. The phenotypic spectrum of SPG3 is broad and also involves very severe childhood-onset cases with pseudobulbar palsy, severe tetraparesis, motor axonal neuropathy and variably cognitive impairment, TCC, or optic atrophy. Furthermore ATL1 mutation also causes hereditary sensory neuropathy I (HSN1D), a severe mutilating sensory axonal neuropathy. Missense mutations in ATL1 are the predominant mutation type in both SPG3 and HSN1D.

SPG10 (KIF5A) and SPG31 (REEP1) both contribute about 5–10 % to SPG4-negative autosomal-dominant HSPs. With a broad age-at-onset spectrum reaching from childhood to late adulthood, they can both manifest as pure or variably complicated HSP. In SPG10, amyotrophy and cognitive deficits are the most frequent complicating features, and most patients with complicated SPG10 feature an axonal sensorimotor peripheral neuropathy. Additionally parkinsonism, deafness, and retinitis pigmentosa have been described in single cases. SPG31 can present with a Silver syndrome-like phenotype with severe hand muscle atrophy and axonal peripheral neuropathy; occurrence of both pure and complicated phenotypes within the same family has been reported.


Autosomal-Recessive HSP


With at least 52 known genes, autosomal-recessive HSP are extremely genetically heterogeneous, and most recessive HSP genes explain less than 1 % of cases (Table 16.3). Among the autosomal-recessive HSP subtypes that can present as pure HSP, SPG5 and SPG7 are the most common although both forms can also be complicated by additional symptoms.


Table 16.3
Autosomal-recessive HSP genes and phenotypes







































































































































































































































































































































































































Locus

Gene

Frequency

Mutation types

Phenotype

Reference

Age of onset

Typical presentation

Rare manifestations

MRI

SPG5

CYP7B1

16 % pure AR HSP

~3 % S HSP

Missense, truncating

Childhood–adulthood

Pure or complicated (afferent ataxia, optic atrophy)

Behavioral abnormalities

Normal or white matter changes and cerebellar vermian atrophy

[22, 23]

SPG7

SPG7

1.5–7 % S/AR HSP

Missense, truncating

Adulthood

Pure or complicated (cerebellar ataxia, optic atrophy)

Upper limb involvement, supranuclear gaze palsy, cognitive deficits

Normal or cerebellar atrophy

[24]

SPG11

SPG11

~20 % AR HSP

Truncating

Adolescence

Complicated (cognitive deficits, dysarthria, amyotrophy, axonal sensorimotor neuropathy)

Cerebellar ataxia, parkinsonism, ALS-like phenotype

TCC, white matter changes, cortical atrophy

[25]

SPG15

ZFYVE25

<3 % AR HSP

Truncating

Adolescence

Complicated (cognitive deficits, dysarthria, amyotrophy, axonal sensorimotor neuropathy; Kjellin syndrome (pigmentary maculopathy)

Parkinsonism, Kjellin syndrome (pigmentary maculopathy)

TCC, white matter changes, cortical atrophy

[26]

SPG18

ERLIN2

Rare

Truncating

Childhood

Complicated (severe cognitive impairment, dysarthria, contractures)
 
Normal

[27]

SPG20

SPG20

Frequent in Old Order Amish population

Truncating

Infancy/childhood

Troyer syndrome: complicated (mild cognitive impairment, dysarthria, distal amyotrophy, short stature)
 
White matter changes

[28]

SPG21

SPG21

Frequent in Old Order Amish population

Missense, truncating

Adolescence/adulthood

Mast syndrome: complicated (severe cognitive impairment, psychosis, dysarthria, cerebellar dysfunction)
 
Thin corpus callosum, cortical and cerebellar atrophy, white matter changes

[29]

SPG26

B4GALNT1

Rare

Truncating >> missense

Childhood/adolescence

Complicated (cognitive deficits, cerebellar ataxia, dysarthria, peripheral neuropathy)

Early disease onset, mental retardation, slow progression with additional variability like ataxia, peripheral neuropathy, and extrapyramidal features

Psychosis, autism, cataract, amyotrophy

Cortical atrophy, white matter changes

[30]

SPG28

DDHD1

Rare

Truncating

Adolescence

Pure

Cerebellar signs, axonal neuropathy

Normal

[31]

SPG30

KIF1A

Rare

Missense

Adolescence/young adulthood

Complicated (peripheral neuropathy, mild cerebellar ataxia)

Allelic disorders: HSAN (caused by truncating mutations)
 
Cerebellar atrophy

[32]

SPG35/FAHN

FA2H

1–2 % AR/S HSP

Missense, truncating

Childhood–adulthood

Complicated (cognitive impairment, optic atrophy, ophthalmoplegia, dysarthria, cerebellar ataxia, seizures, dystonia)

Allelic disorders: NBIA, leukodystrophy
 
Iron deposition in the globus pallidus, TCC, white matter changes, cerebral and cerebellar atrophy

[33]

SPG39

PNPLA6

Rare

Missense > truncating

Childhood/adolescence

Complicated (cerebellar ataxia, motor neuropathy)

Allelic disorders: Gordon-Holmes syndrome, Boucher-Neuhäuser syndrome
 
Cerebellar atrophy

[34]

SPG43/MPAN

C19orf12

Rare

Missense, in-frame deletions

Childhood

Complicated (optic atrophy, psychiatric symptoms, extrapyramidal involvement (dystonia, parkinsonism, peripheral neuropathy)

ALS-like phenotype

Iron deposition in the globus pallidus and substantia nigra

[35]

SPG44

GJC2

Rare

Missense

Adulthood

Complicated (dysarthria, cerebellar ataxia, mild cognitive impairment)

Allelic disorders: Pelizaeus-Merzbacher-like disease

Hearing loss, seizures

Hypomyelination

[36]

SPG46

GBA2

Rare

Truncating > missense

Adolescence/adulthood

Complicated (cerebellar ataxia, cognitive deficits, cataract, axonal neuropathy)

Hearing loss, testicular hypotrophy, dystonia, external ophthalmoparesis

TCC, cerebral and cerebellar atrophy, hummingbird sign (midbrain atrophy)

[37, 38]

SPG47

AP4B1

Rare

Truncating

Infancy

Complicated (severe cognitive deficits, epilepsy, neonatal hypotonia, microcephaly, short stature
 
TCC, white matter changes

[39, 40]

SPG48

AP5Z1

Rare

Truncating

Infancy to adulthood

Pure or complicated (cognitive deficits)
 
Normal or TCC, white matter changes

[41]

SPG49

TECPR2

Rare

Truncating

Infancy

Complicated (severe cognitive deficits, seizures, dysarthria, spastic tetraparesis, gastroesophageal reflux, short stature, dysmorphic features
 
TCC, cerebellar vermian atrophy, cortical atrophy

[42]

SPG50

AP4M1

Rare

Truncating

Infancy

Complicated (severe cognitive deficits, neonatal hypotonia, microcephaly, short stature)
 
White matter changes, cerebellar atrophy

[39]

SPG51

AP4E1

Rare

Truncating
 
Complicated (severe cognitive deficits, epilepsy, neonatal hypotonia, microcephaly, short stature)
 
White matter changes, cerebellar atrophy

[39, 43]

SPG52

AP4S1

Rare

Truncating

Infancy

Complicated (severe cognitive deficits, neonatal hypotonia, microcephaly, short stature)
 
Unknown

[39]

SPG53

VPS37A

Rare

Missense

Infancy

Complicated (cognitive deficits, spastic tetraparesis, kyphosis)

Hearing impairment

Normal

[44]

SPG54

DDHD2

Rare

Truncating >> missense

Childhood

Complicated (cognitive deficits, dysarthria, dysphagia, short stature)

Optic atrophy, saccadic eye pursuit, facial dysmorphism

TCC, white matter changes

[45, 46]

SPG55

C12orf65

Rare

Truncating

Childhood

Complicated (optic atrophy, peripheral neuropathy)
 
Normal

[4749]

SPG56

CYP2U1

Rare

Missense, truncating

Infancy to childhood

Pure or complicated (cognitive deficits, dystonia, axonal neuropathy)
 
Normal or TCC and white matter changes, globus pallidus hypointensities

[31]

SPG57

TFG

1 family

Missense

Infancy

Complicated (optic atrophy, neuropathy)
 
Normal

[50]

SPG58

KIF1C

Rare

Missense, truncating

Infancy to adulthood

Complicated (cerebellar ataxia, extrapyramidal involvement (dystonia, chorea), demyelinating peripheral neuropathy)

Mild cognitive deficits, hypodontia, deafness

Mild dominant phenotype!

White matter changes, cerebral and vermian cerebellar atrophy

[6, 51]

SPG59

USP8

1 family

Missense

Infancy

Pure

Nystagmus, mild cognitive deficits

Normal

[6]

SPG60

WDR48

1 family

In-frame deletion

Infancy

Complicated (mild cognitive deficits, nystagmus, peripheral neuropathy)
 
Normal

[6]

SPG61

ARL6IP1

1 family

Truncating

Infancy

Complicated (mutilating acropathy, sensorimotor neuropathy)
 
Normal

[6]

SPG62

ERLIN1

Rare

Missense, truncating

Childhood

Pure

Amyotrophy, mild cognitive deficits

Normal

[6]

SPG63

AMPD2

1 family

Truncating

Infancy

Pure

Short stature, amyotrophy

TCC, white matter changes

[6]

SPG64

ENTPD1

Rare

Missense, truncating

Infancy

Complicated (cognitive deficits)

Behavioral abnormalities, cataracts

White matter changes

[6]

SPG65

NT5C2

Rare

Truncating

Infancy

Complicated (mild cognitive deficits)

Optic atrophy, amyotrophy, short stature

TCC +/− mild white matter changes

[6]

SPG66

ARSI

1 family

Truncating

Infancy

Complicated (mild cognitive deficits, severe sensorimotor peripheral neuropathy)
 
TCC, cerebellar hypoplasia, colpocephaly

[6]

SPG67

PGAP1

1 family

Truncating

Infancy

Complicated (cognitive deficits, amyotrophy)
 
TCC, hypoplasia of cerebellar vermis, hypomyelination

[6]

SPG68

FLRT1

1 family

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Jun 14, 2017 | Posted by in NEUROLOGY | Comments Off on Genetics of Hereditary Spastic Paraplegias (HSP)

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