Genetic Testing and DNA Diagnosis



Genetic Testing and DNA Diagnosis


Jill S. Goldman

Jacinda B. Sampson



INTRODUCTION

Enormous advances in genetic technology are changing what we know about the molecular mechanisms and causes of neurologic disease. As a result, genetic testing is becoming more common and, at the same time, more complicated. The need for both clinicians and patients to understand the various types of genetic tests and the implication of genetic results is greater than ever. This chapter will review the process of genetic counseling, the genetic mechanisms that influence the appropriate choice of different types of genetic tests, and interpretation of genetic results.


THE PROCESS OF GENETIC COUNSELING


OBTAINING THE FAMILY HISTORY

A review of family history and drawing of a pedigree are the essential first steps for determining the likelihood of a neurogenetic disease. A carefully constructed pedigree can guide the differential diagnosis by indicating whether any family history exists and, if it does, the possible mode of inheritance. At least a three-generation family history should be obtained, which includes ethnicity, age of onset of symptoms, age and cause of death, diagnoses determined by genetic testing, and known history of consanguinity. Specific family history questions can help to narrow the differential diagnosis. As an example, consider the patient with ataxia: a family history that includes mental retardation or premature ovarian failure would suggest a diagnosis of fragile X-associated tremor ataxia syndrome. Similarly, for a patient with amyotrophic lateral sclerosis (ALS) and a family history of dementia, a likely cause is a hexanucleotide expansion in C9orf72. An Ashkenazi Jewish background in the presence of Parkinson disease could indicate a LRRK2 or GBA mutation and, in the presence of dystonia, a Tor1A deletion (Table 34.1).

A lack of family history, however, does not rule out a genetic diagnosis. A negative family history may be due to lack of information, early death, autosomal recessive inheritance, undisclosed adoption, false paternity, or de novo mutations (mutations that first appeared in the patient).


THE GENETIC COUNSELING DISCUSSION

The process of genetic counseling and testing differs, depending on whether the patient is being seen prior to diagnostic testing of a symptomatic patient or for predictive testing of an at-risk family member. Regardless, enough time should be given to genetic counseling to provide the patient/family with the understanding of the implications of testing. Clinicians may refer to the National Society of Genetic Counselors (http://www.nsgc.org) if they wish to locate a genetic counselor in their area. In general, patients should be encouraged to attend all counseling sessions with a support person who can help them interpret the information and support them through the process.

Even when testing is being performed to assist in diagnosis, the nature and genetics of the disorder; the implications of a positive result for other family members; the benefits, risks, and limitations of testing; and an emotional impact of testing should be discussed (Table 34.2).

Pretest counseling for predictive genetic testing is an opportunity for anticipatory guidance. Patients should be asked how they would feel both over the short term and long term upon receiving a positive or negative result. They should consider how a positive or negative result would impact their life decisions including relationships, school or work choices, financial decisions, and reproductive choices. Many patients may need referrals for psychological counseling to help them work through the decision to test. In fact, the Huntington disease genetic testing protocol, which is used by many centers for predictive testing for fatal, untreatable neurogenetic conditions, advocates for a psychiatric assessment of all patients prior to predictive testing (Table 34.3).

As with counseling for diagnostic genetic testing, the benefits, risks, and limitations of testing should be covered. In general, predictive testing should not be performed without confirmation of a genetic diagnosis (and known mutation) in another family member. Without a known mutation in the family, a negative result may falsely reassure the individual, or a discovery of a variant of unknown significance will be inconclusive without other informative cases in the family.

Genetic results should be given in person, especially when they are predictive. While delivering the results, the clinician should review the meaning of the test result for the patient and family members, assess the psychological state of the patient and refer for psychological counseling as necessary, determine a plan of action, and give information about appropriate disease associations and support groups. When a positive result has been given, the clinician should check in with the patient/family following the posttest session.


GENETIC PHENOMENOLOGY

The genetics of neurologic disease is complicated by an array of genetic mechanisms. When considering a genetic etiology, all of these phenomena warrant attention and discussion with patients.


INCOMPLETE AND AGE-DEPENDENT PENETRANCE

Penetrance is the likelihood that an individual carrying a pathogenic mutation will develop the disorder caused by that gene. Incomplete penetrance can be found in many autosomal dominant conditions. Examples of incomplete penetrance include DYT1 early-onset dystonia (about 30% of carriers develop symptoms) and LRRK2-related Parkinson disease (age-dependent penetrance increasing during the life span with 35% to 80% by age 75 years). Penetrance sometimes correlates with certain mutations within the
gene but may also be influenced by other largely unknown genetic or environmental factors. In some disorders such as myoclonusdystonia (ε-sarcoglycan or SGCE), the sex of the transmitting parent determines penetrance (most symptomatic individuals have inherited the mutation from their father).








TABLE 34.1 Family History Questions for Differential Diagnosis of Neurogenetic Disorders





























Disorder


Specific Questions: “Has any family member ever had …”


Dementia


Dementia


Memory problems or other cognitive problems


Language or speech problems


Personality or behavioral change


Mental illness including depression


Any other neurologic disease such as Parkinson disease, ALS


Movement or gait disorder


Strokes


Migraines


Seizures


Neuromuscular disease


Gait or walking problems


Weakness


Heart problems


Developmental delay


Learning disabilities


Dementia or cognitive impairment


Language or speech problems


Personality or behavioral change


Psychiatric illness including depression


Vision problems, including early-onset cataracts


Infertility


Diabetes


Movement disorders


Dementia or cognitive impairment


Learning disabilities or mental retardation


Language or speech problems


Personality or behavioral change


Mental illness including depression


Gait or walking problems


Weakness


Vision problems


Movement disorders


Infertility


Tremor


Seizures


Writer’s cramp or cramps in other muscles


Abnormal posture


Tics or other abnormal movements


Alcoholism


Clumsiness


Immune deficiency


Cancer


Heart problems


Hearing loss


Neuropathies


Walking problems


Numbness, tingling, or pain in limbs


Clumsiness


Difficulty fitting shoes


Neurocutaneous disorders


Birthmarks or spots on skin


Seizures


Hearing problems


Vision problems


Tumors or growths that were removed


Bumps on skin


Scoliosis


Mental retardation or learning disabilities


Heart problems, arrhythmias


Kidney problems


Stroke


Epilepsy


Seizures, spasms


Periods of staring or seeming vacant


Headaches


Vision problems


Learning disabilities, autism, or autism spectrum disorders


ALS, amyotrophic lateral sclerosis.

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Jul 27, 2016 | Posted by in NEUROLOGY | Comments Off on Genetic Testing and DNA Diagnosis

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